PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_BB7235524.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 147aa    MW: 16182.3 Da    PI: 5.0906
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_BB7235524.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1062.4e-3382147163
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrsw 63 
                            ql++fw+++   +++atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw
  Traes_7AL_BB7235524.1  82 QLQQFWAERlseVDQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSW 147
                            89*****9877799**************************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.84E-2146147IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-2696147IPR009072Histone-fold
PfamPF008081.2E-13104147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEPSSQPQPA TGDVVAGGSQ VYPASSYPPA ATIAIAPGII PAGSQPAPPF PANSAQLNAQ  60
NQLIYEQAQQ FHQQLQQQQQ RQLQQFWAER LSEVDQATDF KNHTLPLARI KKIMKADEDV  120
RMISAEAPVV FAKACEIFIL ELTLRSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-2172147884HapE
4g92_C2e-2172147884HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8622160.0KJ862216.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.19e-65PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG75e-36NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLW5HAJ61e-103W5HAJ6_WHEAT; Uncharacterized protein
STRINGORGLA06G0202500.14e-66(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-34nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]